Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEAVKTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELSNYLASHMAGGDDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI
4WWS Chain:E ((7-253))
----VKTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELSNYLASHMAGGDDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI
General information:
TITO was launched using:
RESULT:
Template:
4WWS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123699 for 1845 contacts (-67.0/contact) +
2D Compatibility (PS) -26763 + (NN) -12235 + (LL) 376
1D Compatibility (HY) -38000 + (ID) 12350
Total energy: -212671.0 ( -115.27 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_4WWS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WWS-query.scw
PDB file :
Tito_Scwrl_4WWS.pdb
: