Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METVLQAKNVRKIYGSKGNVYTALENISIDIKEGEFTGIMGPSGAGKSTLLNVLSTIDKPTSGQIVISGQELENMNEQQMSTFRRDKLGFIFQDYNLLDTLTIRENIILPLALAKR---PVKEMEEKLAIISEKFGITE-ILDKYPSEISGGQKQRTAASRAIITSPSLIFADEPTGALDSKSATNLLESLRDLNEQDKSTIMMVTHDAFAASFCKRILFIKDGELYTEIYRGTKTRKEFFQKILDVLAKLGGDSDDVI
3TIF Chain:A ((1-229))
---MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL---------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111052 for 1854 contacts (-59.9/contact) +
2D Compatibility (PS) -24601 + (NN) -10039 + (LL) 1928
1D Compatibility (HY) -16800 + (ID) 4600
Total energy: -165164.0 ( -89.09 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_3TIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIF-query.scw
PDB file :
Tito_Scwrl_3TIF.pdb
: