Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MNWTIWDKSQKVPYTLLLEADPSEKQIAKYLDKSHVFQLMHDDIVIGIICLFPLNNDQLEIMNIAVSSDYRNQGIGKKLLEKAFDYAIHKHFIKIIVKTGNSSIDQLAFYQKNGFRMQHIIPNYFTENYPNQTITENGIVCLD-QIILLKEIKS
1YVK Chain:A ((5-156))
KLRIELGEETNDELYDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHYDED-IFENGIQCRDMVRLYLDLL--
General information:
TITO was launched using:
RESULT:
Template:
1YVK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95015 for 1112 contacts (-85.4/contact) +
2D Compatibility (PS) -16361 + (NN) -7111 + (LL) 88
1D Compatibility (HY) -13200 + (ID) 2600
Total energy: -134199.0 ( -120.68 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_1YVK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YVK-query.scw
PDB file :
Tito_Scwrl_1YVK.pdb
: