Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIERINEDTIKFYISYLDLEERGFNQEDVWYDREKSEELFWDMMDELKYEEEFSPEGPLWIQVQALKHGLEVFVTKATIGGKGEDGFDVTLSSPDELAEEKIEKLLEENFNPVKKEALGEDDTLEFILEFRDFEDAISLSRATGLENLVTKLYSYQGKYYLNVEFPENKYDESNIDNAVSILLEYGLESNLTGYMLAEYGKVIFDVPALKQIRKHF
2Y1R Chain:J ((7-96))
----------------------------------------------------------------------------------------------------------------------------LQFVLRFGDFEDVISLSKL-NVNGSKTTLYSFENRYYLYVDFC-NMTDE-EVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHF
General information:
TITO was launched using:
RESULT:
Template:
2Y1R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55764 for 685 contacts (-81.4/contact) +
2D Compatibility (PS) -9850 + (NN) -3765 + (LL) 8648
1D Compatibility (HY) -10000 + (ID) 2250
Total energy: -72981.0 ( -106.54 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_2Y1R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y1R-query.scw
PDB file :
Tito_Scwrl_2Y1R.pdb
: