Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNSDIIVADFWKNNEEILTDFDKDSFCESWTENEM-WSIEFKVAQTPKNAHCYSFLDYESSVYFRGQEFVVKQLSHDAVGKTLSKDIRAPHIYYTCQDGRQDDAITGSFTLEQCLTHIFKTDNRGFSWEIIDPSNILEKVQQENFGNNNYLTLIDQLLDDYGVVVIPDNRHLVFKPREIYGAKTENFIRYKYNTDEASFDIDTLSLKTKIKGYGKVDSNGNNYFSPITYTSPEVEKWGIRWQEPVSDERYTVAGN-MQRRLKLELQDYPATTGSVILKNDYECEKGDYVLFIYEPLGIDYDVQIVAYKKYPFTIKAPEITLSNNKKSIV-SIMAQLAKVLKGAK |
| 3GS9 Chain:A ((3-339)) | --SDIIVADF-WNNEEILTDFDDSF---ESWTENEMWSIEFVAQTCYSF------LDYESSVYFRGQEFVVKQLSHD---ATLSKDIRAPHIYYTCQDGRQDDAITGSFTLEQCLTHIFT-DNRGFSWEIIDPSNI-LEVQQENFGNNNYLTLIDQLLDDYGVVVIPDNRHLVFPREI--YGAKTENFIRYYNTDEASFDIDTLSLTIGYGV----DSNGNNYFSPITYTSPEV-EWGIRWQEPVSDERYTVAGNMQRRLLEL--QDYPATTGSVILEC-----EGDYVLFIYEPLGIDYDVQIVAYYPFTIA---PEITLSNNSIVSIMAQLAVLG------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -39767 for 2092 contacts (-19.0/contact) +
2D Compatibility (PS) -31625 + (NN) -6105 + (LL) 3568
1D Compatibility (HY) -34800 + (ID) 11500
Total energy: -120229.0 ( -57.47 by residue)
QMean score : 0.404
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