Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MFLGLRELVYSKLRYI----LVTGIMVLIMLLSLILSGLANGLAYDNASSVADNGVPYYVLSKDAQDKLSRSQFPESKLADVKKDANVKDAAVLGQSMQTLKRESDDKKFSVALFGIQPDSFLAP-KISDGANIQVTKPDEIVVDSSLKS-DGIKIGDVLMDDILNRELTV------VGFTENQKYSHAPVVYINIATWQEINPVLYHQKIPQTSTIAIKTENPDKGVTL-TDKDLTTIDHKEFLNQIPGYSAEQMTLNMMIFFLIIIGGFILTAFFYVMTLQKTTQFG-----ILKALG--TKTSYLVKSIITQVV---IISIISILISVGVTLILPSIMPAAMPFRLSPMTIALYSG--------------LFFLVALFGAL--LSLRRIAKVDALDAIRGGDE----------- |
| 4MND Chain:A ((40-457)) | LMKAVILAAGLGGGVPKPLVRVGGCEIILRTMKLLSPHVSEFIIVASRYADDIDAFLKDKGFNYKIVRHDRPEK-------GNGYSLLVAKNHVEDRFILTMGDHVYSQQFIEK--AVRGEGVIADREPRFVDIGEATKIRVEDGRVAKIGKDLREFDCVDTGFFVLDDSIFEHAEKLRDREEIPLSEIVKLARLPVTYVDGELWMDVDT---KEDVRRANRALVSAAVGDGFISRKINRKISTRISAAIVNKV---NPNQMTLISFLVGAFSALASFFSIPLAGLLYQFSSILDGCDGEIARASLKMSKKGGYVDSILDRFVDFLFLAIIALLYPKTATVAMFAIFGSVMVSYTSEKYKAEFGESIRVLNYIPGKRDERIFLIMIFCLLSAISLQWIFWMFLFVAAISLTRVVVTLLAVLVS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121823 for 2663 contacts (-45.7/contact) +
2D Compatibility (PS) -36810 + (NN) -3583 + (LL) 768
1D Compatibility (HY) -17200 + (ID) 3300
Total energy: -181948.0 ( -68.32 by residue)
QMean score : 0.161
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