Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLVIGANGKIGRLLVEKLAMEKGFFVRAMVRKAEQVSELEKLGAKPII-ADLKKDFHYAYDEIEAVIFTAGSGGHTPASETVNIDQNGAIKAIETAKEKGVRRFIIVSSYGADNPENGPESLAHYLKAKQAADEELKKSGLDYTIVRPVGLSDDPATGKIAEVS---GKPKTNIPRADVADFISEALSEKSSFYKTYTIESGDTPIKQFFN
3E8X Chain:A ((24-227))
--VLVVGANGKVARYLLSELK-NKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDPDQGPMNMRHYLVAKRLADDELKRSSLDYTIVRPGPLSNEESTGKVT-VSPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEVLNGDTPI-----
General information:
TITO was launched using:
RESULT:
Template:
3E8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103370 for 1654 contacts (-62.5/contact) +
2D Compatibility (PS) -22611 + (NN) -15255 + (LL) 808
1D Compatibility (HY) -17200 + (ID) 5000
Total energy: -162628.0 ( -98.32 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_3E8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E8X-query.scw
PDB file :
Tito_Scwrl_3E8X.pdb
: