Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHLTDMGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPAFVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAPIFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWEFN
4IFT Chain:A ((13-266))
MRKYNGYLIDLDGTMYRGTERIDAASGFIKELNRLHIPYLFVTNNSTRTPEQVADKLVSLDIPATPEQIFTSSMATANYVYDLDQNAMIYFIGEEGLYKALKEKGFSFADENADVVIVGLDREVTYEKLAVACLAVRNGAKLISTNGDLVLPTERGLMPGNGAFTALISHSTQVKATFVGKPEPIIMEQALKVLGTNKNETIMVGDNYDTDILAGIRAGLDTLLVHTGVTTVEKLKEYKQQPTYSMKSLDDWKF-
General information:
TITO was launched using:
RESULT:
Template:
4IFT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138447 for 2170 contacts (-63.8/contact) +
2D Compatibility (PS) -28222 + (NN) -13911 + (LL) -80
1D Compatibility (HY) -26000 + (ID) 6850
Total energy: -213510.0 ( -98.39 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_4IFT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IFT-query.scw
PDB file :
Tito_Scwrl_4IFT.pdb
: