Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
M-KKHIVLIVVACITVIAVFMYIVQINNSELKY--------------QNRAQIKIASQMASQNEQTDNSIVSEITYK--
1W8X Chain:P ((1-116))
MDKKKLLYWVGGGLVLILIWLWFRNRPAAQVASNWEGPPYMTYNQPQAGSVTLPVADSITSQLNDYASSLNDYLASQAG
General information:
TITO was launched using:
RESULT:
Template:
1W8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6834 for 232 contacts (-29.5/contact) +
2D Compatibility (PS) -6078 + (NN) 1080 + (LL) 0
1D Compatibility (HY) -5200 + (ID) 450
Total energy: -17482.0 ( -75.35 by residue)
QMean score : 0.249
(partial model without unconserved sides chains):
PDB file :
Tito_1W8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W8X-query.scw
PDB file :
Tito_Scwrl_1W8X.pdb
: