Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRLLSIAFFGIAVICLLFPWMSSGIDAATFELVYEPAYKLIWMQPIIIVGYLGFLCTIFIPKFQRGKNRIVPFIGILILVLGLLNLAVRPLFG-FDSFNFSIIDAYVSELVEPAFLIAVSASILSLIMYAIYLKKSENL
4N4Y Chain:A ((31-61))
-------------------------------------------------------------------------------LVLGFLALIVGSLFGPFQALNYGNVDAY---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4N4Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6099 for 102 contacts (-59.8/contact) +
2D Compatibility (PS) -2627 + (NN) -614 + (LL) 11100
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -4190.0 ( -41.08 by residue)
QMean score : -0.140
(partial model without unconserved sides chains):
PDB file :
Tito_4N4Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N4Y-query.scw
PDB file :
Tito_Scwrl_4N4Y.pdb
: