Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRRLDRFNAPDDTVNTLFQVYKTISFWKVLKNTLVIEFGRFFPWMGGKRKIYRVCLGMEIGEKTAIAYKVMPDLFFPEKILIGENSIIGYHTTILTHEYLLS-------EYRVGEVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKEKATLT
2P2O Chain:A ((72-184))
------------------------------------------------------GYNIHVGENFFMNFDGVI--LDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKDVPANAVVGGNPAKVIKWL---
General information:
TITO was launched using:
RESULT:
Template:
2P2O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94137 for 798 contacts (-118.0/contact) +
2D Compatibility (PS) -11586 + (NN) -1494 + (LL) 4532
1D Compatibility (HY) -5200 + (ID) 1800
Total energy: -109685.0 ( -137.45 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_2P2O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P2O-query.scw
PDB file :
Tito_Scwrl_2P2O.pdb
: