Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQIISALIFPCLLVI-LFARITYNRYVGLLLMVILIAASAKLGYTSSMWLIIIDAFSMTIGFVLATYMLRRLKKSGSDF
1VFY Chain:A ((7-73))
-DWIDSDACMICSKKFSLLNRKHHCRSCGGVFC-----------QEHSSNSIPLPDLGIYEPVRVCDSCFEDYEFIVTD-
General information:
TITO was launched using:
RESULT:
Template:
1VFY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69793 for 418 contacts (-167.0/contact) +
2D Compatibility (PS) -7113 + (NN) -2915 + (LL) 1588
1D Compatibility (HY) -1200 + (ID) 550
Total energy: -79983.0 ( -191.35 by residue)
QMean score : 0.096
(partial model without unconserved sides chains):
PDB file :
Tito_1VFY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VFY-query.scw
PDB file :
Tito_Scwrl_1VFY.pdb
: