Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VEAKLQVGVLGFGTVGSGVIHILEEHQEKISQVTGYNISVKKVLVRDLEKNRRYETKGFELTTNPSDVLDDPEIAVVVEVMGSITTAREYILQALKAGKHVVTANKDLIALHGDELVAVAQANNCDLFYEASVAGGIPILRTIVNSLAADKIQKVMGIVNGTTNFMLTKMTTEKKSYEDVLAEAQALGFAESDPTNDVDGIDAARKMVIMTRLAFGMNVNLDNVETNGIRGISPEDIEVAYQLGYKIKLVGTAEETNGTVNVNVGPVLLPKAHPLAGVNYENNAVFVTGAAVGETMFYGPGAGELPTATSVVSDLITVAKNSR-LGTN-G--NAFNSYK-HETKHTPKEQVFSKYYLRLTMDDKTGTFLKLTQIFAEAGVGFDKILQQPYDDFTATVVIVTHSTSQAQLEQAIARVKDEPEMQMLAKYSVVEG |
3MTJ Chain:A ((8-440)) | -MKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEA-LAGGLPLTTNPFDVVDDPEIDIVVELIGGLEPARELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGGIPIIKALREGLTANRIEWLAGIINGTSNFILSEMRDKGAAFDDVLKEAQRLGYAEADPTFDIEGIDAAHKLTILSAIAFGIPMQFERAYTEGISQLTREDVRYAEELGYRIKLLGIARRAENGIELRVHPTLIPERRLIANVDGAMNAVLVKGDAVGPTLYYGAGAGSEPTASAVVADLVDVTRLHTADPHHRVPHLAFQPDQLADTPILPMEAVRTAYYLRLRAF-RPGVLADITRILADSSISIDAMVQKE----QVDIILLTHVTLEKNVNAAIAKIEALDAVAGKVMRIRLED |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MTJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -243702 for 3676 contacts (-66.3/contact) +
2D Compatibility (PS) -46783 + (NN) -19065 + (LL) 280
1D Compatibility (HY) -37200 + (ID) 8450
Total energy: -354920.0 ( -96.55 by residue)
QMean score : 0.554
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