Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKQVALYIAVSLDGYIADENGSVEWLESIDSE--GDAGYEAFFDNVDTVVMGRTTYQQIFSLTDTFPYSKKDVYVFSNTKAGT--KDEY-ADFVAGTVDTWLNNID---GEKIWLVGGAKLVQQFLKERAIDRFVITIAPIILGKGIPLFEED-QEHALELEEVTRFGQ-FAQLTYKNLEEN
3KY8 Chain:A ((18-196))
-QGMANIVFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRNTLDMVLSFDCDWPY-SKPVFVLSNTMTEVPQGYEDKVFLVKGKLVDIIADLNAKGFNELYIDGGVTI-QNFLKEDLIDEMVITRFPILLGGGVPLFGELESSLSFNVIKSEVVLDSLTQTTYHRKR--
General information:
TITO was launched using:
RESULT:
Template:
3KY8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106154 for 1178 contacts (-90.1/contact) +
2D Compatibility (PS) -18046 + (NN) -1886 + (LL) 396
1D Compatibility (HY) -18400 + (ID) 3000
Total energy: -147090.0 ( -124.86 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3KY8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KY8-query.scw
PDB file :
Tito_Scwrl_3KY8.pdb
: