Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGYRKLGRTSSQRKALLRDLATDLIVFERIETTEARAKEIRKVVEKLITSGKKGDLHARRQAAAFIRHEVVEVVQVDAKGKDGSTVKKNRPVYALQKLFDDVAPRYAERQGGYTRILKKGPRRGDGAPMVIIELV
3J3W Chain:N ((1-120))
MSYRKLGRTSAQRKAMLRDLTTDLIINERIETTETRAKELRSVVEKMITLGKRGDLHARRQAAAYIRNEVAN----EENNQD-----------ALQKLFSDIATRYEERQGGYTRIMKLGPRRGDGAPMAIIELV
General information:
TITO was launched using:
RESULT:
Template:
3J3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20309 for 793 contacts (-25.6/contact) +
2D Compatibility (PS) -13389 + (NN) -8442 + (LL) 1032
1D Compatibility (HY) -11600 + (ID) 4600
Total energy: -57308.0 ( -72.27 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_3J3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J3W-query.scw
PDB file :
Tito_Scwrl_3J3W.pdb
: