Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIKIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGKGIRYEGEHVRRKEGKTGK
487D Chain:J ((2-163))
--------IEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVR--------
General information:
TITO was launched using:
RESULT:
Template:
487D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56765 for 1174 contacts (-48.4/contact) +
2D Compatibility (PS) -18027 + (NN) -10111 + (LL) 596
1D Compatibility (HY) -16400 + (ID) 5900
Total energy: -106607.0 ( -90.81 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_487D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-487D-query.scw
PDB file :
Tito_Scwrl_487D.pdb
: