Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKANDIRDLSTTEIQDQEKALKEELFNLRFQLAT-GQLENTARIREVRKAIARMKTIVRERELA
1VQ8 Chain:V ((4-66))
LHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGD-
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5954 for 355 contacts (-16.8/contact) +
2D Compatibility (PS) -6992 + (NN) -3252 + (LL) 144
1D Compatibility (HY) -1600 + (ID) 1350
Total energy: -19004.0 ( -53.53 by residue)
QMean score : 0.756
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: