Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSIPSFLKLVEIQTKIASVFPFMLGTLFVVYQYDMFKPINTLIIFGSMLIFDLTTTAINNYMDYRKATDNHDYDYRTTSNVIGQEQIPVRTVIITIFLMFFIATGLGVWLVFRTDLLVLLIGFVCFCIGILYTFGPVPLSRMPLGEIFSGVTMGFGIFFLAVYVNAYDAGIANLLWQGEMVTIQFNLIEIIRIGVVSLPCIFTIANIMLANNLCDLDEDIRNHRYTLPYYIGRKMGVLLFNTLYYASFLAVVVSVAINFLHPIMLLSLITIYPVYRNLVKFNKEQVKSKTFVIGIRNFVLINATLTILMAVSVVLQQLT |
| 4OD4 Chain:A ((22-296)) | -----------LVRIEHTIFSLPFAYVGALLSRYPFTLADAILMAAAVVGLRMAGMAYNNIADLDIDRLNPRTAKRPLVVGAVSLREAWALVAAGSAIYFASAALLNTYALLLSPLVLAIALTYPHAKRLH-----------PLPHLHLGIVLGSVVFGGAVAASGDEASSLGEVLR----SVPWLYVAAVSLWVAGFDTIYSIMDIDFDRS---------HGLGSIPALLGPKGALAASLAMHAAAVALFIAGVEAYGLGAIATVSTALTALVIILVQAMAWLG--------RVKESFNLNLAVPIIIGAGIIVDML- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OD4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -305460 for 2336 contacts (-130.8/contact) +
2D Compatibility (PS) -27621 + (NN) 558 + (LL) 3376
1D Compatibility (HY) -6800 + (ID) 1850
Total energy: -337797.0 ( -144.60 by residue)
QMean score : 0.277
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