Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLKKVAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTETKKTAKTDGTMTDGTYKLEEKNFDDKGWKGFMSIEVKDGKITKANYDYKNKDGKLKSEDADYEKAMKDKVGTGPQEYLKQLSDSLVKNQSAASVEVVSGATHSSDAFINYANQLIQAAQKADTTTISINNLAKMEDGTYKLEEQNY-AHGYRVVFSMDVKDGKITKSDYNYVDKDG-KLKSDDADYEKNMKAKSGTGPKEYIPALNKSLVEKQDVAAVDTVSGATNSSNQFKIYAAQLQNAAQNGNTDTIKVYNLVEAE |
3O6U Chain:A ((29-148)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKDGDYTVETAKADDHGYKAKLSIKVSDGKITEAKYNEFNGETNAMKREDKDYNEKMTGVSGIGPAEYEPQLEKALIEKQS-SDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLVDL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3O6U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 35014 for 850 contacts (41.2/contact) +
2D Compatibility (PS) -12085 + (NN) 2404 + (LL) 10256
1D Compatibility (HY) 1600 + (ID) 1200
Total energy: 35989.0 ( 42.34 by residue)
QMean score : 0.203
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