Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRKGPVAKRDVLPDPIYNSKLVTRLINKMMVDGKRGKSQAILYSAFDIIAQETGKDPMEVFEQAMKNIMPLLEVKARRVGGANYQVPIEVRADRRSTLGLRWLVNYARLRGEKTMEVRVAREIMDAANNTGASVKKREDTHKMADANRAFAHYRW
3GTY Chain:S ((9-155))
---------RQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYRW
General information:
TITO was launched using:
RESULT:
Template:
3GTY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39455 for 1070 contacts (-36.9/contact) +
2D Compatibility (PS) -16066 + (NN) -6759 + (LL) 320
1D Compatibility (HY) -15200 + (ID) 4200
Total energy: -81360.0 ( -76.04 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_3GTY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GTY-query.scw
PDB file :
Tito_Scwrl_3GTY.pdb
: