Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRAAVLYENNVIKAEQIDEATCGKDQVRVEVKAVGICGSDIHKMQ----TRWKYPLPAVMGHEFAGVITEIGSEVTNVAMGDRVAGIPLEPCMECNYCKAGDFALCDNYRMVGSHF-HGGFAENVVMKADNVISIGD-LDFEEGAMIEPLAVSMHGVLGIQPRLGDTVIVFGIGTIGILVVQCLLLAGVKDIIAVDISDKKLADAREFGCKYT--INPKNED---LKERVFAYTNGLGADIALECAGSKITQEQCLL----VTKKKGKVGFLGIAYADVLLHEEAFENIFRRELTLKGFWNSYSAPFPGEEWRTSIEFVKQGRIKLKPLISHRYKLEETKEAFDMILSREHDYNKVMILPQKGDD |
| 1E3J Chain:A ((7-351)) | --SAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDL-PNVTIDCSGN----EKCITIGINITRTGGTLMLVGMGSQMVTV---PLVNACAREIDIKSVFR-YCNDYP-----IALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1E3J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -276085 for 2905 contacts (-95.0/contact) +
2D Compatibility (PS) -34913 + (NN) -6844 + (LL) 692
1D Compatibility (HY) -23600 + (ID) 5300
Total energy: -346050.0 ( -119.12 by residue)
QMean score : 0.455
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