Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLNEALKKAERIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSPEYMLSHTCLVREPEKFYQFVTENMYYP-NAVPNVIHKKMAEIETEKDVT-IITQNIDGLHEKAGSKKVVNFHGSLYHCYCQNC--GMTVTAKDYLKSDIHTD-CGGVIRPDVVLYEEAISESAIDQSLTAIRKADLIVIVGTSFRVSPFCNLT-DYRNKKARIFAVNKERISL-PYPFEMMESDAVKVFEEI
1M2G Chain:A ((4-236))
--KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLW-NRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDEL
General information:
TITO was launched using:
RESULT:
Template:
1M2G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139028 for 1872 contacts (-74.3/contact) +
2D Compatibility (PS) -24288 + (NN) -8435 + (LL) 272
1D Compatibility (HY) -14800 + (ID) 3800
Total energy: -190079.0 ( -101.54 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_1M2G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2G-query.scw
PDB file :
Tito_Scwrl_1M2G.pdb
: