Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFFIDTANVEEIKKANRMGFISGVTTNPSLVAKEGR-DFNEVIQEITSIVDGPISGEVVSLEADEMIAEGRVIAKIHPNMVVKIPMTGEGLAAVKVLTEEGIKTNVTLVFSATQALLAARAGATYVSPFLGRLDDIGDDGLVLIRDIADIFEIHGIPTEIISASVRHPIHVIECAKAGADIATVPFKVFEQMLKHPLTDSGIDKFLADWEAAKK
3R8R Chain:A ((1-212))
MLFFVDTANIDEIREANELGILAGVTTNPSLVAKEANVSFHDRLREITDVVKGSVSAEVISLKAEEMIEEGKELAKIAPNITVKIPMTSDGLKAVRALTDLGIKTNVTLIFNANQALLAARAGATYVSPFLGRLDDIGHNGLDLISEVKQIFDIHGLDTQIIAASIRHPQHVTEAALRGAHIGTMPLKVIHALTKHPLTDKGIEQFLADWNK---
General information:
TITO was launched using:
RESULT:
Template:
3R8R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131234 for 1711 contacts (-76.7/contact) +
2D Compatibility (PS) -23113 + (NN) -5480 + (LL) 272
1D Compatibility (HY) -23600 + (ID) 6650
Total energy: -189805.0 ( -110.93 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_3R8R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R8R-query.scw
PDB file :
Tito_Scwrl_3R8R.pdb
: