Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFLKELESNLTVSKLMELCFEHPNYKDYCSVISTKKGEVLESLSPAGTKVYFVLSGIYGMIVEEDAEMEEESCKECIVRFLQKG-DSFGLYHLFYDEWSPHVSMQSLGHGEVMEVDSNFLFSIFDKKDENNFFMIKVMAEELREAHTFAKLSFLKK--EERIRKAILKCAQTLGTFSD--NGILLPREITQEVLARYTNTSREYVAHTVMHLIKEDIIRNRPKPLLVMDKTRL
4RFA Chain:A ((21-216))
---------------------EFPDYYKYVTKKTYTLNEKIIFEDEKAKSIFFIVEG-YAAVELEDNLRKTNYISIFVLPYNVLGIDAFSSYP----KHSITVMSESLM---LYKIDADFLLNILSIKPDVNDFLLTSIADVF--ARHYALLGMIAKTPKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLLTELVEEEFLINKKSP---------
General information:
TITO was launched using:
RESULT:
Template:
4RFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68746 for 1262 contacts (-54.5/contact) +
2D Compatibility (PS) -20959 + (NN) -14450 + (LL) 4116
1D Compatibility (HY) -14800 + (ID) 2650
Total energy: -117489.0 ( -93.10 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_4RFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RFA-query.scw
PDB file :
Tito_Scwrl_4RFA.pdb
: