Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VILIIDHNDSFTYNLYQYFLELQEEVQVVSATSFSLEAFQQLAPEMVVLSPGPGSPEDF---PVSLALLGK-I-QVPILGICLGHQIIGHFFGAKVVPANVPVHGKTSVISHT---GEGLFADLEPAFQVTRYHSLVIDPTTVPVNLKVTAVT-EDGVIMGLVHATKPIHSVQFHPEAILSENGHAILKNFVRLGRNVK
1QDL Chain:B ((3-195))
LTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVD--EVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLNRV----
General information:
TITO was launched using:
RESULT:
Template:
1QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166927 for 1625 contacts (-102.7/contact) +
2D Compatibility (PS) -19976 + (NN) -9071 + (LL) 188
1D Compatibility (HY) -14800 + (ID) 3900
Total energy: -214486.0 ( -131.99 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_1QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QDL-query.scw
PDB file :
Tito_Scwrl_1QDL.pdb
: