Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPEQFQMALAEKGIELSDDQMKQFHDYFEMLVEWNEKMNLTAITDEKEVYLKHFYDSISAAFYVDFTKFDTICDVGAGAGFPSLPIKICFPHLKVSIVDSLKKRMTFLDALAEKLGLTDVHFYHDRAETFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFSFSLPVEESERNIYVITKTKETPNKYPRKPGTPNKLPIE
1XDZ Chain:A ((1-238))
MNIEEFTSGLAEKGISLSPRQLEQFELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAVARLSVLSELCLPLVKKNGLFVALKAA-AEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNTPKKYPRKPGTPNKSPIE
General information:
TITO was launched using:
RESULT:
Template:
1XDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141535 for 2033 contacts (-69.6/contact) +
2D Compatibility (PS) -25969 + (NN) -15672 + (LL) 120
1D Compatibility (HY) -28800 + (ID) 8300
Total energy: -220156.0 ( -108.29 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_1XDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XDZ-query.scw
PDB file :
Tito_Scwrl_1XDZ.pdb
: