Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKQRQLLLKIENLEDDFNRKRRQLDEAMDEASQEKWRFH----QELENLSEQIRYIYQKRDYDASEDLPKA--------YHLISSIQEEGEWMV---KNAVT--HLENESEEHQTLYKKQVTAYEEELHQLKKERD
1Y1L Chain:A ((9-124))
------------------NTARSVMAEALFNAMAKSWKAESAGVEKAERVDETVKRLLAERGLKAKEK-PRTVDEVNLDDFDLIVTVCEESSCVVLPTDKPVTRWHIENPAGKDEGTYRRVLAEIEERVKKLVGE--
General information:
TITO was launched using:
RESULT:
Template:
1Y1L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 14016 for 636 contacts (22.0/contact) +
2D Compatibility (PS) -10876 + (NN) -2647 + (LL) 1816
1D Compatibility (HY) -7200 + (ID) 1350
Total energy: -6241.0 ( -9.81 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_1Y1L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y1L-query.scw
PDB file :
Tito_Scwrl_1Y1L.pdb
: