Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTALKGVVFDLDGVITDTAHYHYLAWKKTAESIGIEFDEAFNENLKGVSRIDSLLLILRKDGRENDFTEEQIEALAADKNDFYVSLLKEITPADVLPGIKELIVDLKKQNLKCAIASVSKNARTVLSALEMEQEFDYIVDAAKITKSKPDPEIFVEACRGLGLETSEVVGIEDAQAGIEAINAAGIVSVGVGS--GLRDADMTVKSTGLLDLRILEILHSK
4GIB Chain:B ((26-238))
----IEAFIFDLDGVITDTAYYHYMAWRKLAHKVGIDIDTKFNESLKGISRMESLDRILEFGNKKYSFSEEEKVRMAEEKNNYYVSLIDEITSNDILPGIESLLIDVKSNNIKIGLSSASKNAINVLNHLGISDKFDFIADAGKCKNNKPHPEIFLMSAKGLNVNPQNCIGIEDASAGIDAINSANMFSVGVGNYENLKKANLVVDSTNQLKFEYIQ-----
General information:
TITO was launched using:
RESULT:
Template:
4GIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132245 for 1801 contacts (-73.4/contact) +
2D Compatibility (PS) -22898 + (NN) -12901 + (LL) 916
1D Compatibility (HY) -24400 + (ID) 5050
Total energy: -196578.0 ( -109.15 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_4GIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GIB-query.scw
PDB file :
Tito_Scwrl_4GIB.pdb
: