Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNLRKRLSRLYAEDVVDSLAARIEARVQQT--------QQ--RK-LTRKDQWDE--KDIVLITYGDQFKEESQKTLTTFKKMYDSYLKSA-FEIVHFLPFYPYS---SDDGFSVIDYKAVNPELGDWKDIKEMEKS-----ARLMFDFVCNHMSAKSDWFK
3UCQ Chain:A ((41-195))
-EDLWESLRAVYGDQVRA-LPGRLLEVMLHAYHARPAELRRLDEARLLRPDWLQRPEMVGYVA-YTDRFA----GTLKGVEERLD-YLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSALARALRGRGISLVLDLVLNHVAREHAWAQ
General information:
TITO was launched using:
RESULT:
Template:
3UCQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45527 for 797 contacts (-57.1/contact) +
2D Compatibility (PS) -14213 + (NN) -7474 + (LL) 504
1D Compatibility (HY) -14000 + (ID) 1800
Total energy: -82510.0 ( -103.53 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_3UCQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UCQ-query.scw
PDB file :
Tito_Scwrl_3UCQ.pdb
: