Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYDSMFQTQVDTIS------GM---H-----WDMKKRQISPQAAGKMMEAIYYQN-------GDIVNYLSKTDFDNTRIPKNIP--VKVAHKIGDA-YDYKHDAAIVYA--EQPFIMIIFTDKSS--------YDDITKIADDVYQVLK |
| 2CC1 Chain:A ((31-292)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DQLAELERR--DNVLIGLYAANLQSGRRITHRPDEMFAMCSTFKGYVAARVLQMAEHGEISLDNRVFVDADAL-------VPNSPVT-EARAGAEMTLAELCQAALQRSDNTAANLLLKTIGGP--AAVTAFARSVGDERTRLDRWEVELNSAIPGDPRDTSTPAALAVGYRAILAGDALSPPQRGLLEDWMRANQT--SSMRAGLPEGWTTADKTGSGDYGSTNDAGIAFGPDGQRLLLVMMTRSQAHDPKAENLRPLIGELTALVLPSLL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CC1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -92245 for 1878 contacts (-49.1/contact) +
2D Compatibility (PS) -23566 + (NN) -5135 + (LL) 13760
1D Compatibility (HY) -3200 + (ID) 2000
Total energy: -112386.0 ( -59.84 by residue)
QMean score : 0.435
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