Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPHLSKEAFKKQIKNGIIVSCQALPGEPLYTESGGVMPLLALAAQEAGAVGIRANSVRDIKEIQEVTNLPIIGIIKREYPPQEPFITATMTEVDQLASLDIAVIALDCTLRERHDGLSVVEFIQKIKRKYPEQLLMADISTFEEGKNAFEAGVDFVGTTLSGYTDYSRQEEGPDIELLNKLCQAGIDVIAEGKIHTPKQANEINHIGVAGIVVGGAITRPKEIAERFISGLS
1YXY Chain:A ((6-232))
----TKEKLMEQLKGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRPKEIAERFIEALK
General information:
TITO was launched using:
RESULT:
Template:
1YXY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140134 for 1901 contacts (-73.7/contact) +
2D Compatibility (PS) -24784 + (NN) -15512 + (LL) 288
1D Compatibility (HY) -27600 + (ID) 8600
Total energy: -216342.0 ( -113.80 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_1YXY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YXY-query.scw
PDB file :
Tito_Scwrl_1YXY.pdb
: