Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKKKTFSAYNFLTALILCLLTVLFIFPFYWIMTGAFKSQPDTIIIPPQWWPKAPTLENFKALTVQNPALRWLWNSVFISIMTMFLVCCTSSMAGYVLAKKRFYGQKILFSLFIAAMALPKQVVLVPLVRIINFMGIH------DTLWAVILP-LVGWPFGVFLMKQFSENIPTELLESAKIDGCGEIRTFINVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRNNLTISLGVATMQAEMATNYGLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG
3FH6 Chain:G ((3-287))
MVQPKSQKARLFITHLLLLLFIAAIMFPLLMVVAISLRQRITPP---------------------PFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRWLVN---------
General information:
TITO was launched using:
RESULT:
Template:
3FH6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -177836 for 1627 contacts (-109.3/contact) +
2D Compatibility (PS) -24834 + (NN) -4044 + (LL) 1848
1D Compatibility (HY) -22000 + (ID) 3250
Total energy: -230116.0 ( -141.44 by residue)
QMean score : 0.299
(partial model without unconserved sides chains):
PDB file :
Tito_3FH6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FH6-query.scw
PDB file :
Tito_Scwrl_3FH6.pdb
: