Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVMTDPIADFLTRIRNANQAKHEVLEVPASNIKKGIADILKREGFVKNVEVIEDDKQGIIRVFLKYGQNGERVITNLKRISKPGLRVYTKHEDMPKVLNGLGIAIVSTSEGLLTDKEARQKNVGGEVLAYIW
4PDB Chain:A ((27-155))
---TDPIADMLTRIRNANMVRHEKLEVPASKIKKEIAELLKREGFIRDVEYIEDNKQGILRIFLKYGANNERVITGLKRISKPGLRVYAKADEVPRVLNGLGIALVSTSKGVMTDKDARQLQTGGEVVAYVW
General information:
TITO was launched using:
RESULT:
Template:
4PDB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71763 for 940 contacts (-76.3/contact) +
2D Compatibility (PS) -14091 + (NN) -5139 + (LL) 608
1D Compatibility (HY) -16000 + (ID) 4700
Total energy: -111085.0 ( -118.18 by residue)
QMean score : 0.683
(partial model without unconserved sides chains):
PDB file :
Tito_4PDB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PDB-query.scw
PDB file :
Tito_Scwrl_4PDB.pdb
: