Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
4W5H Chain:A ((6-216))
MNLLIMGLPGAGKGTQAAKIVEQFHVAHISTGDMFRAAMANQTEMGVLAKSYIDKGELVPDEVTNGIVKERLSQDDIKETGFLLDGYPRTIEQAHALDKTLAELGIELEGIINIEVNPDSLLERLSGRIIHRVTGETFH-----PVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPIIAHYRAKGLVHDIEGNQDINDVFSDIEKVLTNL-
General information:
TITO was launched using:
RESULT:
Template:
4W5H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94330 for 1491 contacts (-63.3/contact) +
2D Compatibility (PS) -22551 + (NN) -9927 + (LL) 232
1D Compatibility (HY) -24800 + (ID) 8650
Total energy: -160026.0 ( -107.33 by residue)
QMean score : 0.676
(partial model without unconserved sides chains):
PDB file :
Tito_4W5H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W5H-query.scw
PDB file :
Tito_Scwrl_4W5H.pdb
: