Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVD-AIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK
1IBK Chain:M ((2-122))
-ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKK
General information:
TITO was launched using:
RESULT:
Template:
1IBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35572 for 748 contacts (-47.6/contact) +
2D Compatibility (PS) -12184 + (NN) 924 + (LL) 208
1D Compatibility (HY) -9200 + (ID) 3600
Total energy: -59424.0 ( -79.44 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_1IBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IBK-query.scw
PDB file :
Tito_Scwrl_1IBK.pdb
: