Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MTKIYHMILCNSDIMKILAIIKSLPLNDCWLCAGTLRNFIWNKLSGINE-TLTSDIDVVFFDKNISYEETVVLEQQLKDNYPQYDWELKNEFYMNTHSPNTPKYTSSKDAISKFPEKCTAVGARLDDRNQLELYLPYGEEEILNFIVSPTPYFEEDLLRYNVYLKRVDKKKWNNIWPRLTIIKK
2LA3 Chain:A ((1-191))
GMNTVKNKQEILEAFRESPDMMAILTIIRDLGLKDSWLAAGSVRNFIWNLLSDKSPFDHETDIDVIFFDPDFSYEETLLLEKKLREDFPQYQWELKNQVYMHQHSPHTASYTSSRDAMSKYPERCTAVGLRLNEELDFELYVPYGLEDILNFQVRPTPHFLENEDRMELYQTRLSKKNWQEKWKNLIFKNT
General information:
TITO was launched using:
RESULT:
Template:
2LA3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88839 for 1337 contacts (-66.4/contact) +
2D Compatibility (PS) -19575 + (NN) -9874 + (LL) 0
1D Compatibility (HY) -18000 + (ID) 4650
Total energy: -140938.0 ( -105.41 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_2LA3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LA3-query.scw
PDB file :
Tito_Scwrl_2LA3.pdb
: