Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNNTEFYDRLGVSKDASQDEIKKAYRRMSKKYHPDINKETGAEEKYKEVQEAYETLSDTQKRAAYDQYGA--AGANGGFGGFDGGGFGGFDGGGFGGFEDIFSSFFGGGGMRNPNAPRQGDDLQYRVNLSFEEAIFGAEKEVSYN-RESSCHTCSGSGAKPGTSPVTCQKCHGSGVINVDTQTPLGTMRRQVTCDVCQGSGQEIKE----KCPTCHGTGHEKKTH---KVSVKIPAGVETGQQIRLTGQGEAGFNGGPYGDLFVIINVLPSQQFERNGSTIYYTLKISFVQAALGDTIDIPTVHGAVEMSIPAGTQTGKTFRLRGKGAPKLRGGGQGDQHVTVNIVTPTKLNDAQKEALHAFAEASGDKMVHPKKKGFFDKVKDALDVD |
| 4J80 Chain:A ((6-248)) | ----DYYAILGVPRNATQEEIKRAYKRLARQYHPDVNKSPEAEEKFKEINEAYAVMSDPEKRRIYDTYGTTEAPPPPPPGGYD---FSGFDVEDFSEF---FQELFGPGLF------GKGRDLRAELPLTLEEAFHGGERVVEVAGRRVSVRMP--PGVREG-SVIRVPGMGGQGNPPGD----LLLVVRMLPHPVFRLEGQDLYATLDVPAPIAVVGGKVRAMTLEGPVEVAVPPRTQAGRKMRLKGGGFPGPAG--RGDLYLEVRITIPERLTPEEEALWKKLAEAYYAR------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J80.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25599 for 1539 contacts (-16.6/contact) +
2D Compatibility (PS) -25440 + (NN) -10404 + (LL) 4656
1D Compatibility (HY) -14800 + (ID) 4350
Total energy: -75937.0 ( -49.34 by residue)
QMean score : 0.361
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