Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKEKTSQLVQLAIVTAISIVLGMFISIPTPTGFLTLLDAGIFFAAFYFGKKEGAVVGALAGFLIDLLKGYPNWMFFSLLIHGAQGYLAG--LPG-----RRRLLGLISATLVMVLGYAIASGLMYGWGAVLPDIPGNIMQNMVGMVVGFALNKSLERVKK
4HZU Chain:S ((7-162))
--KENTIAAVLIAMTVALSIL--VVIPIPATKGIVTLCEVGIYTSAILYGRRMGLLVGGASGFLIDILTGYPVWCLFSLVIHGTQGLVVGWLLPRHHKGIRSMLLPLLVGSLVMVIGYCLATTLLFGWPAGLASIFGNVVQVGFGAGVTLSIVGPLTRLKP
General information:
TITO was launched using:
RESULT:
Template:
4HZU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106013 for 1197 contacts (-88.6/contact) +
2D Compatibility (PS) -15947 + (NN) -8409 + (LL) 312
1D Compatibility (HY) -21600 + (ID) 3350
Total energy: -155007.0 ( -129.50 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_4HZU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HZU-query.scw
PDB file :
Tito_Scwrl_4HZU.pdb
: