Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITLEKFIDHLNVEEVLFTFFTKLISILLLIIAFVIVRQVINYLFEKTVNRSLA-FSRQKVARQKTLAKLSHNVLNYTLYFFLFYWILSILGVPISSLLAGAGIAGVAIGLGAQGFLSDVVNGFFILLENQFDVGDIINVGTVSGTVTNVGIRTTQIHDFDGTLHFIPNRNITIVSNKSRSNMRAQIDIPLFVHTNLDQISDIVTKINEEYVSKHPAIVGEPTVFGPTTN-ANGQFVYRINIFTQNGAQFDIYAEFYKLYQKAILEEGIDLPTYNFSNNHSR
3UDC Chain:A ((20-277))
----------------------FLLDVLKILIIAFIGIKFADFLIYRFYKLYSKSKIQLPQRKIDTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGISGTVEEIGLRVTKIRGFSDGLHIIPNGEIKMVTNLTKDSMMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDDLIEGPTVLGIT-DMQDSKLVIMVYAKTQPMQKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKR
General information:
TITO was launched using:
RESULT:
Template:
3UDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128028 for 1630 contacts (-78.5/contact) +
2D Compatibility (PS) -27480 + (NN) -14780 + (LL) 2528
1D Compatibility (HY) -25600 + (ID) 3750
Total energy: -197110.0 ( -120.93 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_3UDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDC-query.scw
PDB file :
Tito_Scwrl_3UDC.pdb
: