Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKKKSVFTCQECGYQSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLNGEKSRPTKLKDVSSINYSRTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAN-------KGTVLYVSGEES--AEQIKLRSERLGDI----DNEFYLYAETNMQS-------IRSEIEKIKPDFLIIDSIQTIMSPEVSS--VQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIRRVTRIEQRINEASKLGFTKIYAPKNSLAGIEIPKGIDVIGVTTVSQVLKAVFST |
3LDA Chain:A ((156-396)) | -----------------------------------------------------------------ELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR-----GELSARQMHLAKFMRALQRLADQFGVAVVVTNQV---------NIMAYSSTTRLGFKKGK-GCQRLCKVVDSPCLPEA-ECVFAIYEDGVGDPR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LDA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115670 for 1602 contacts (-72.2/contact) +
2D Compatibility (PS) -21099 + (NN) -12264 + (LL) 17152
1D Compatibility (HY) -9200 + (ID) 1750
Total energy: -142831.0 ( -89.16 by residue)
QMean score : 0.572
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