Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTYFDNFLKTNQAYADLHGTAHLPIKPKTKVAIVTCMDSRLHVAQALGLDLGDAHILRNAGGRVTDDVLRSLVISQQQLGTREIVVLHHTDCGAQTFTNEAFATQLQRDLGVDMHGHDFLPFNDIEESVREDVAKLHASPLIPNDVVISGAIYDVDTGRMVEVK
3LAS Chain:B ((4-166))
--SYFDNFIKANQAYVDLHGTAHLPLKPKTRVAIVTCMDSRLHVAPALGLALGDAHILRNAGGRVTDDVIRSLVISEQQLGTSEIVVLHHTDCGAQTFTNAEFTEQLKRDLAVDAGDQDFLPFTDIEESVREDIALLKNSPLIPEDIIISGAIYDVDTGRVREVN
General information:
TITO was launched using:
RESULT:
Template:
3LAS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101910 for 1125 contacts (-90.6/contact) +
2D Compatibility (PS) -17922 + (NN) -10282 + (LL) 260
1D Compatibility (HY) -20800 + (ID) 6550
Total energy: -157204.0 ( -139.74 by residue)
QMean score : 0.696
(partial model without unconserved sides chains):
PDB file :
Tito_3LAS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAS-query.scw
PDB file :
Tito_Scwrl_3LAS.pdb
: