Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSEINEKVEPQPIDLGEYKFGFHDDVKPIYSTGKGLNEAVIRELSAAKGEPEWMLDFRLKSLETFNKMPMQTWGADLSDIDFDDIIYYQKASDKPARDWDDVPEKIKETFERIGIPEAERAYLAGASAQYESEVVYHNMKEEYDKLGIVFTDTDSALKEYPELFKKYFAKLVPPTDNKLAALNSAVWSGGTFIYVPKGVKVDIPLQTYFRINNENTGQFERTLIIVDEGASVHYVEGCTAPTYSSNSLHAAIVEIFALDGAYMRYTTIQNWSDNVYNLVTKRATAKKDATVEWIDGNLGAK---TTMKYPSVYLDGEGACGTMLSIAFANKGQHQDTGAKMIHNAPHTSSSIVSKSIAKGGGKVDYRGQVTFNKDSKKSVSHIECDTILMDDISKSDTIPFNEIHNSQVALEHEAKVSKISEEQLYYLMSRGLSEAEATEMIVMGFVEPFTKELPMEYAVELNRLISYEMEGSVG |
4DN7 Chain:A ((61-423)) | ---------------------------------------------------------------------------------------------KPIEDLQSLDEESKKTLLQVGVIPSEEGR-SGSFLVLDNAVSHSTLKDK----NVELMSTHKAMEKY-EWLKDYSWKLVQVDADKYTAKTYLEDADGYFIRVPAGKKTSMPVQTCLMLGSKKAAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEMYIKKGGTLNFTMIHNWAEQIG--VRPRTVVSVEEGGTYVSNYICLKPVRSVQTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITI-GGRLIARGEMIGN--AKGAKGHLECKGLVLTDKGSQLAIPILEANVDDIELTHEAAVGKIAKDQVEYLMARGLTEDEAVGMIIRGFLDVGIRGIPEELKEEIENTIAQTALGM-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DN7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129463 for 3195 contacts (-40.5/contact) +
2D Compatibility (PS) -39166 + (NN) -15324 + (LL) 5836
1D Compatibility (HY) -20400 + (ID) 5700
Total energy: -204217.0 ( -63.92 by residue)
QMean score : 0.395
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