Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNLLLKCKDKKVKAFTLLEMLVVLIIISVLLLLFVPN----LSKQK--ESVTRTGNAAVVKVVESQAELFELQ-ETGRKASLSTLKSGGYITEKQEKAYLDYYKDSSNGSQKISS
2PMU Chain:A ((42-107))
------------------------------LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP--------------------
General information:
TITO was launched using:
RESULT:
Template:
2PMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3273 for 309 contacts (-10.6/contact) +
2D Compatibility (PS) -6183 + (NN) -677 + (LL) 4388
1D Compatibility (HY) -5200 + (ID) 1200
Total energy: -12145.0 ( -39.30 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_2PMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PMU-query.scw
PDB file :
Tito_Scwrl_2PMU.pdb
: