Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVIRKFCTYQKLRVKAFTLLECLVALVTITGAL---------LVYQGLTKLLAQQIVVMSSSSQSEWVLLTQQLNA---------EFEGAHLEYLRQNKLYLRKQDKIVTFGKSNKDDFRKTGYDGRGYQPMVYGLDNCQMSQTKSMVKLVFYFKDGLKRTFYYDFKEET
1YWK Chain:A ((1023-1123))
---------------------EFLVEKVFIPGAISLTYTHNDRMIFGGVTPTTEELEIILDKELGVDYFLERRELGVINIGGPGFIEIDGAKETMKKQDGYYIGKETKHVRFSSENPDNPAK-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YWK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11435 for 463 contacts (-24.7/contact) +
2D Compatibility (PS) -8241 + (NN) 6964 + (LL) 5280
1D Compatibility (HY) -6000 + (ID) 1150
Total energy: -14582.0 ( -31.49 by residue)
QMean score : 0.154
(partial model without unconserved sides chains):
PDB file :
Tito_1YWK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YWK-query.scw
PDB file :
Tito_Scwrl_1YWK.pdb
: