Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKEKLLVPALNCLLGLLFLGDHWFLFRLQNGELFAIVTLILLCTTSFLINKNHPKNLTLISMIITFLAVLSFLSTFLLA------------------------------------------------------------------------------------------------------------------------------------------- |
4MND Chain:A ((40-457)) | LMKAVILAAGLGGGVPKPLVRVGGCEIILRTMKLLSPHVSEFIIVASRYADDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVEDRFILTMGDHVYSQQFIEKAVRGEGVIADREPRFVDIGEATKIRVEDGRVAKIGKDLREFDCVDTGFFVLDDSIFEHAEKLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRALVSAAVGDGFISRKINRKISTRISAAI--------VNKVNPNQMTLISFLVGAFSALASFFSIPLAGLLYQFSSILDGCDGEIARASLKMSKKGGYVDSILDRFVDFLFLAIIALLYPKTATVAMFAIFGSVMVSYTSEKYKAEFGESIRVLNYIPGKRDERIFLIMIFCLLSAISLQWIFWMFLFVAAISLTRVVVTLLAVLVS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -27190 for 341 contacts (-79.7/contact) +
2D Compatibility (PS) -7350 + (NN) -2709 + (LL) 792
1D Compatibility (HY) -1200 + (ID) 900
Total energy: -38557.0 ( -113.07 by residue)
QMean score : 0.203
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