Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISVDGELRTRKYEKDGQTHYITEVLASSFQLLESRSQRAMRENNISGDLSDLVLEEEELPF
3VDY Chain:A ((4-107))
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYE---VNVYVTEVLADTVRFMD----------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37887 for 647 contacts (-58.6/contact) +
2D Compatibility (PS) -11012 + (NN) -4184 + (LL) 1604
1D Compatibility (HY) -10400 + (ID) 2200
Total energy: -64079.0 ( -99.04 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_3VDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VDY-query.scw
PDB file :
Tito_Scwrl_3VDY.pdb
: