Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKVIIFDMDGVIVDSEYTFLDNKTEMLREEGIDTDVSYQYQYMGTTFEFMWQAMKEEFGLPKTVKEYIAEMNRRRQAIVARDGVRPIKGAQRLIHWLHQHGYRLAVASSSPMVDIKRNLKE-LGVTECFEYMVTGED--VSSSKPAPDVFLRAAELLDVDP--KVCIVIEDTRNGSLAAKAAGMYCFGFANPDYPPQDLSMADKVISDYQDIYIYLPE
3L5K Chain:A ((29-244))
PVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTKLKEV-FP-TAALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFG
General information:
TITO was launched using:
RESULT:
Template:
3L5K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94941 for 1676 contacts (-56.6/contact) +
2D Compatibility (PS) -23648 + (NN) -18903 + (LL) 116
1D Compatibility (HY) -9200 + (ID) 2850
Total energy: -149426.0 ( -89.16 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3L5K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L5K-query.scw
PDB file :
Tito_Scwrl_3L5K.pdb
: