Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLFSEIFKFCISILWYFILTKNKGVVVMRAWKGIVLILSSIVVTLVAWQNAGLSEFVVPGLALTSLSLTFLLSTKFRILESYFQGIENMYFYHKVMAVFSMILLLLHKIGLGQGGHGSEFAKTIGSAGLYLFLSIVFVAYFGNFLKYEIWRFIHRFVYLVYILGLVHTFLILGDRILGNTLLSLIVLGYAVIGVISGFYIIFLYSRMRFR-------RVGYVQKVTHLNHDTTEIEIA---MKRPYRYDYGQFTFLKIYQAGFES-AAHPFSISG---GHDRVIFLTVKASGDYTKSIYKQLKVGTKIALDRAYGHMLFDKDKKE-QVWIAGGIGITPFISFIRENSIL--TKRVDFFYTFSNQDNLIYQDMLESYAKANPNFKLHLN------------NSSLQGRLDFSQ---SVFEGQPTIFMCGPTSMTSTYAKVFRQKD-AKSRLVYEGFSFRDSWLSIFLLKTFDKVYSNLIK |
1GVH Chain:A ((1-396)) | --------------------------------------------------------------MLDAQTIATVKATIPLLVETGPKLTA-HFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHLLATLDEMFSP--GQEVLDAWGKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYECFGPHKVL------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -278295 for 2851 contacts (-97.6/contact) +
2D Compatibility (PS) -37397 + (NN) 5131 + (LL) 8772
1D Compatibility (HY) -3200 + (ID) 2800
Total energy: -307789.0 ( -107.96 by residue)
QMean score : 0.397
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