Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNWSRIWELVKINILYSNPQTLSALRKKQEKHPKKEFSAYKSMFRNQLFQILLFSIIYVFLFVSLDFKEYPGYFTFYIGIFTLVSIIYSFIAMYSVFYESDDVKQYAYLPIKSEELYVAKIFATFGMSVTFLMPILTLMIVAYWRIIGGPLAVLLAIINFAILFLSVTVISLYINSLIGRAIIRSANRKLISTILISLATFGAIVPLLFVNMTSQKMVQGKLQDIAPIPYVRGYYDIVT--APFSMESLLNYYLPLLIILFLIGAIYKWVMPRYYQELLYGQVKQRKVHRQIDFSKRESINKTLVKHHLSSLQNATLLTNTFLMPLLYLAMFIVPILNNGKEIGRFFNENYFGIAFLAGILIGSLCVMPASIVGVGISLEKSNFYFIKSLPISFSYFLKHKFVTLITLQLAVPTFIYFLVGFFLLKLSILVLLSFILGLVFMGLIEGQFIYRRDYKHLFLNWQEVTQLFNRGVGQWLLVGSLFGMMIIGSFLIGISIFWSMVWNTVAVNIIILITGLLILSICQYLLLKNFWKKLV |
2YCY Chain:A ((167-253)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCDFVTNRAYAIASSIISFYIPLLIMIF--------VALRVYRE---AKEQIR--DRA---SKRKRV--MLMREH-KALKTLGIIMGVF--TLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCRSPDFRKAFKRLLAF-------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -22912 for 404 contacts (-56.7/contact) +
2D Compatibility (PS) -8506 + (NN) -2750 + (LL) 37524
1D Compatibility (HY) -12400 + (ID) 1550
Total energy: -10594.0 ( -26.22 by residue)
QMean score : 0.303
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