Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKESFKLIATAAAGLEAIVGREIRNLGIDCQVENGRVRFHGDIKTIIETNLWLRAADRIKIIVGEFPARTFEELFQGVYGLDWENYLPLGAKFPIAKAKCVKSKLHNEPSVQAISKKAVAKKLQKVFHRPEGV--PLQENGAEFKIEVSILKDKATVMIDTTGSSLFKRGYRAEKGGAPIKENMAAAIIQLSNWFPDKPLIDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEAWPWVDQSQVQKVRDEAESKANYDIDLDISGFDLDGRMVEIARKNAEEAGLGDVIKLKQMRLQDLKTDKINGVIISNPPYGERLLDDKAVDILYNEMGQTFAPLKTWSKFILTSDEGFEKKYGSQADKKRKLYNGTLKVDLYQYYGERVRRQVK |
| 3LDG Chain:A ((1-380)) | MKKTFNLVATAAAGIEAVVGKELRNLGLDCQVENGRVLFKGNIETIAKSNLWLRSADRIKIVVGEFPARTFEELFQGVYALDWENYLPLGCQFPVAKAKSVKSKLHNEPSIQGITKKAIVKKLQHYFHRPDSVPLPE--NGPEFKIEISLLKDQARVMIDTTGPSLFKRGYRTE---APIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDTDFEQKFGRKADKKRKLYNGSLKVDLYQFYGQRVK---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LDG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189920 for 3143 contacts (-60.4/contact) +
2D Compatibility (PS) -40202 + (NN) -13913 + (LL) 420
1D Compatibility (HY) -49200 + (ID) 14950
Total energy: -307765.0 ( -97.92 by residue)
QMean score : 0.583
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